BinaryDosage - Creates, Merges, and Reads Binary Dosage Files
Tools to create binary dosage files from either VCF or GEN files, merge binary dosage files, and read binary dosage files. Binary dosage files tend to have quicker read times than VCF and GEN formats. There is a small increase in size compared to compressed VCF and GEN files.
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zlibcpp
4.52 score 2 dependents 563 downloadslsReg - Performs Large Scale Regressions
Routines to perform large scale regression. Linear, logistic, and Poisson regressions are supported. Large scale regression efficiently fits models where a small number of covariates are changing and the subjects have complete data. A genome wide association study would be an example.
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openblascppopenmp
3.38 score 2 dependents 497 downloadsGxEScanR - Run GWAS/GWEIS Scans Using Binary Dosage Files
Tools to run genome-wide association study (GWAS) and genome-wide by environment interaction study (GWEIS) scans using the genetic data stored in a binary dosage file. The user provides a data frame with the subject's covariate data and the information about the binary dosage file returned by the BinaryDosage::getbdinfo() routine.
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3.04 score 22 scripts 376 downloads